SNP Profiles of UF 613   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCCTTCTAGACCCAGCCGGGGATCG
1._UF_613
__CCTTCT_ACCCAGCC__AT_
2._UF_613
__CCTTCT_ACCCAGCC__AT_
3._UF_613
__CCTTCT_ACCCAGCC__AT_
4._UF_613
__CCTTCT_ACCCAGCC__AT_
5._UF_613
__CCTTCT_ACCCAGCC__AT_
6._UF_613
__CCTTCT_ACCCAGCC__AT_
7._UF_613
__CCTTCT_ACCCAGCC__AT_
8._UF_613
__CCTTCT_ACCCAGCC__AT_
9._UF_613
__CCTTCT_ACCCAGCC__AT_
10._UF_613
__CCTTCT_ACCCAGCC__AT_
11._UF_613
__CCTTCT_ACCCAGCC__AT_
12._UF_613
__CCTTCT_ACCCAGCC__AT_
13._UF_613
__CCTTCT_ACCCAGCC__AT_
14._RUQ_1573
__CCTTCT_ACCCAGCC__AT_
15._UF_613
__CCTTCT_AC_AGCC__AT_
16._RUQ_1573
__CC_____AG_GG___
17._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
18._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
19._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
20._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
21._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
22._GC-05-057-2-08
TTCCCCTTCTAGACCCAGCCGGGGATCG
23._GC-05-057-2-08
TTCCCCTTCTAGACCCAGCCGGGGATCG
24._GC-05-057-2-08
TTCCCCTTCTAGACCCAGCCGGGGATCG
25._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
26._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
27._GC-08-046-1-57
TTCCCCTTCTAGACCCAGCCGGGGATCG
28._GC-05-057-2-08
TTCCCCTTCTAGACCCAGCCGGGGATCG
29._GC-05-057-2-08
TT_CCTTCTAGACCCAGCCGGGGATCG
30._RUQ_1573
__CC_CTAGACGGAG__GGATCG
31._UF_613
__AAGTTT_CCCCAG___AA_
 1516171819202122232425262728
_Input profile
AAACCTGTCCACCTCTTTTTAGTTACGG
1._UF_613
AAACCTGTCCAC_CT_TT___GG
2._UF_613
AAACCTGTCCAC_CT_TT___GG
3._UF_613
AAACCTGTCCAC_CT_TT___GG
4._UF_613
AAACCTGTCCAC_CT_TT___GG
5._UF_613
AAACCTGTCCAC_CT_TT___GG
6._UF_613
AAACCTGTCCAC_CT_TT___GG
7._UF_613
AAACCTGTCCAC_CT_TT___GG
8._UF_613
AAACCTGTCCAC_CT_TT___GG
9._UF_613
AAACCTGTCCAC_CT_TT___GG
10._UF_613
AAACCTGTCCAC_CT_TT___GG
11._UF_613
AAACCTGTCCAC_CT_TT___GG
12._UF_613
AAACCTGTCCAC_CT_TT___GG
13._UF_613
AAACCTGTCCAC_CT_TT___GG
14._RUQ_1573
AAACCTGTCCAC_CT_TT___GG
15._UF_613
AAACCTGTCCAC_CT_TT___GG
16._RUQ_1573
_AC__CCACCT_TTTTAG_ACGG
17._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
18._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
19._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
20._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
21._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
22._GC-05-057-2-08
AAACCTGTCCACCTCTCTTTAGTTACGG
23._GC-05-057-2-08
AAACCTGTCCACCTCTCTTTAGTTACGG
24._GC-05-057-2-08
AAACCTGTCCACCTCTCTTTAGTTACGG
25._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
26._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
27._GC-08-046-1-57
AAACCTGTCCACCTCTCTTTAGTTACGG
28._GC-05-057-2-08
AAACCTGTCCACCTCTCTTTAGTTACGG
29._GC-05-057-2-08
AAACCTGTCCACCTCTCTTTAGTTACGG
30._RUQ_1573
____CCACCT______CC
31._UF_613
AGACCTGTCGAC_TT_GG___CG
 2930313233343536373839404142
_Input profile
CGCTAGCCCTGGAGTTGTCTCTCTGGAG
1._UF_613
_CTAG_CT___GT__CTGGAG
2._UF_613
_CTAG_CT___GT__CTGGAG
3._UF_613
_CTAG_CT___GT__CTGGAG
4._UF_613
_CTAG_CT___GT__CTGGAG
5._UF_613
_CTAG_CT___GT__CTGGAG
6._UF_613
_CTAG_CT___GT__CTGGAG
7._UF_613
_CTAG_CT___GT__CTGGAG
8._UF_613
_CTAG_CT___GT__CTGGAG
9._UF_613
_CTAG_CT___GT__CTGGAG
10._UF_613
_CTAG_CT___GT__CTGGAG
11._UF_613
_CTAG_CT___GT__CTGGAG
12._UF_613
_CTAG_CT___GT__CTGGAG
13._UF_613
_CTAG_CT___GT__CTGGAG
14._RUQ_1573
_CTAG_CT___GT__CTGGAG
15._UF_613
_CTAG_CT___GT__CTGGAG
16._RUQ_1573
__AGCC____GT___GG_
17._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
18._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
19._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
20._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
21._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
22._GC-05-057-2-08
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
23._GC-05-057-2-08
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
24._GC-05-057-2-08
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
25._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
26._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
27._GC-08-046-1-57
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
28._GC-05-057-2-08
CGCTAG_CTGGAGTTGTTTCTCTGGAG
29._GC-05-057-2-08
CGCTAGCCCTGGAGTTGTTTCTCTGGAG
30._RUQ_1573
CGCT__CT_AGTT__CT_CC_
31._UF_613
_CTAG_TT___GT__CCCGAG

Input profile: UF_613 RUQ_1573

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

2._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

3._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

4._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

5._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

6._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

7._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

8._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

9._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

10._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

11._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

12._UF_613

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

13._UF_613

identical
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

14._UF_613 RUQ_1573

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._UF_613

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

16._UF_613 RUQ_1573

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

20._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

21._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._UF_613 GC-05-057-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

23._UF_613 GC-05-057-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._UF_613 GC-05-057-2-08

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

26._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._UF_613 GC-08-046-1-57

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._UF_613 GC-05-057-2-08

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

29._UF_613 GC-05-057-2-08

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._UF_613 RUQ_1573

85 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

67.4 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484